PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00014528_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 89aa    MW: 10288.6 Da    PI: 9.9434
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00014528_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-095789136
                               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkf 36
                                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++
  FANhyb_icon00014528_a.1.g00001.1 57 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTY 89
                                      89****99**********99966...3.6*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-4123IPR001471AP2/ERF domain
PROSITE profilePS510328.781122IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-55789IPR016177DNA-binding domain
PfamPF008472.4E-55789IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-45889IPR001471AP2/ERF domain
PROSITE profilePS5103210.0725889IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
AARAYDLAAL KYWGQDTILN LPVSTYEEEL KEMEGQSKEE YIGSLRRKSS GFSRGVSKYR  60
GVARHHHNGR WEARIGRVFG NKYLYLGTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305469.15e-59PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y64e-48WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLU5GNH04e-54U5GNH0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18350.11e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-50AP2 family protein